pimkl API

• pimkl package
  • Subpackages
    • pimkl.cli package
      • Submodules
      • pimkl.cli.analyse module
      • pimkl.cli.cli module
      • pimkl.cli.preprocess module
      • Module contents
    • pimkl.factories package
      • Submodules
      • pimkl.factories.estimator_factory module
      • pimkl.factories.induction_factory module
      • pimkl.factories.mkl_factory module
      • Module contents
    • pimkl.models package
      • Submodules
      • pimkl.models.pimkl module
      • Module contents
    • pimkl.utils package
      • Subpackages
      • Submodules
      • pimkl.utils.objects module
      • Module contents
  • Submodules
  • pimkl.analysis module
    • plot_aucs_to_buffer()
    • plot_weights_significant_correlations_to_buffer()
    • plot_weights_to_buffer()
    • significant_correlations()
    • significant_pathways()
  • pimkl.data module
    • get_learning_data()
    • get_learning_data_in_dict_mode()
    • get_learning_data_in_dict_mode_fraction()
    • get_learning_data_indices_fraction()
  • pimkl.evaluation module
    • performances()
    • roc_analysis()
    • roc_multiclass()
    • roc_two_classes()
    • sensitivity()
    • specificity()
  • pimkl.inducers module
    • get_matching_data_and_network()
    • get_pathway_inducer()
    • get_pathway_selector()
    • read_gmt()
    • read_gmt_from_file_pointer()
    • read_inducer()
    • write_inducer()
    • write_inducers()
    • write_preprocessed()
  • pimkl.network module
    • Network
      • Network.get_laplacian()
      • Network.get_sub_network()
    • filter_interaction_table_by_labels()
    • force_undirected_coo_matrix_input()
    • generate_random_sets()
    • get_fantom5_network()
    • get_network_from_csv()
    • get_network_from_pandas_interactions_list()
    • get_random_scale_free_interaction_df()
    • get_string_network()
    • get_unique_rows()
    • is_symmetric()
    • scale()
    • selected_set_to_weighted_adjacency()
  • pimkl.pimkl module
  • pimkl.run module
    • fold_generator()
    • run_model()
  • Module contents